Publikasi CoE IBR-GS

PUBLIKASI TERKAIT

Publikasi Geiser Cisolok

Penelitian mengenai Actinobacteria dan Chloroflexota termofilik yang diisolasi dari kawasan geotermal Cisolok, Jawa Barat, mencakup penemuan taksa baru, pengujian aktivitas enzimatik, serta identifikasi metabolit sekunder dari komunitas yang hidup di lingkungan sumber air panas (geyser) dan tanah hutan.

Publikasi Tahun 2026 Recent Research & Current Publications
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2026

Thermus javaensis sp. nov., a novel thermophilic bacterium isolated from litter of geyser in Cisolok, West Java, Indonesia

Ningsih, F., Yabe, S., Rachmania, M.K., Sari, D.C.A.F., Kim, S.-G., & Sjamsuridzal, W.

International Journal of Systematic and Evolutionary Microbiology, 76:007136

2026

Ktedonobacterial community in forest soils and quartz rock near geysers in Cisolok geothermal area based on metabarcoding analysis

Draft

Rachmania, M.K., Eshananda, Y., Ningsih, F., Sari, D.C.A.F., Sakai, Y., Yabe, S., Yokota, A., & Sjamsuridzal, W.

Manuscript in preparation

Publikasi Tahun 2025 Recent Research
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2025

Mutactimycins Hโ€“J, antimycobacterial anthracyclines, from a thermophilic actinomycete of the genus Gandjariella

Triningsih, D.W., Kimachi, S., Ningsih, F., Sjamsuridzal, W., Shigeno, S., Nur, E.A.A., Ohsiro, T., & Igarashi, Y.

The Journal of Antibiotics, 78(11), 651โ€“658

Publikasi Tahun 2024 Research Publications
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2024

Activities of cellulolytic, amylolytic, and secondary metabolites from thermophilic Actinomycetes collected from the heated soil around Cisolok geyser

Sari, D.C.A.F., Ningsih, F., Rachmania, M.K., Yokota, A., & Sjamsuridzal, W.

Makara Journal of Science, 28(4), 316โ€“329

2024

Dictyobacter halimauensis sp. nov., a new member of the phylum Chloroflexota from forest soil in a geothermal area

Rachmania, M.K., Ningsih, F., Sari, D.C.A.F., Sakai, Y., Yabe, S., Yokota, A., & Sjamsuridzal, W.

International Journal of Systematic and Evolutionary Microbiology, 74(12), 006600

Publikasi Tahun 2022 Research Publications
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2022

Identification and screening of enzymatic abilities of Ktedonobacteria from forest soil of Cisolok Geothermal Area, Indonesia

Rachmania, M.K., Ningsih, F., Sari, D.C.A.F., Eshananda, Y., Sakai, Y., Yabe, S., Yokota, A., & Sjamsuridzal, W.

Biodiversitas Journal of Biological Diversity, 23(9), 4686โ€“4695

Publikasi Tahun 2021 Research Publications
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2021

Antibacterial activity of a thermophilic actinobacterium Streptomyces cellulosae SL2-2-R-9 on different growth media

Sari, D.C.A.F., Ningsih, F., Yabe, S., Yokota, A., Oetari, A., & Sjamsuridzal, W.

Journal of Physics: Conference Series, 1943(1), 012099

2021

Antibacterial activity of Microbispora rosea subsp. rosea SL3-2-R-1 grown on different media and solidifying agents

Ningsih, F., Sari, D.C.A.F., Yabe, S., Yokota, A., Oetari, A., & Sjamsuridzal, W.

Journal of Physics: Conference Series, 1918(5), 052011

Publikasi Tahun 2020 Research Publications
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2020

Potential secondary metabolite biosynthetic gene clusters and antibacterial activity of novel taxa Gandjariella

Ningsih, F., Sari, D.C.A.F., Yabe, S., Yokota, A., Oetari, A., & Sjamsuridzal, W.

Biodiversitas, 21(12), 5674โ€“5684

2020

Xylan-degrading ability of thermophilic Actinobacteria from soil in a geothermal area

Rachmania, M.K., Ningsih, F., Setyaningsih, P.P., Syafitri, W.A., Sari, D.C.A.F., Yabe, S., Yokota, A., & Sjamsuridzal, W.

Biodiversitas Journal of Biological Diversity, 21(1), 144โ€“154

2020

Isolation and identification of rare actinomycete-like bacteria from soil based on 16S ribosomal RNA gene sequences

Eshananda, Y., Ningsih, F., Sakai, Y., Yokota, A., Yabe, S., & Sjamsuridzal, W.

Journal of Physics: Conference Series, 1524(1), 012062

2020

Aerial mycelium formation in rare thermophilic Actinobacteria on media solidified with agar and gellan gum

Sari, D.C.A.F., Ningsih, F., Yokota, A., Yabe, S., Sjamsuridzal, W., & Oetari, A.

IOP Conference Series: Earth and Environmental Science, 483(1), 012017

Publikasi Tahun 2019 Research Publications
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2019

Cellulolytic enzyme-producing thermophilic Actinobacteria isolated from the soil of Cisolok Geysers, West Java, Indonesia

Setyaningsih, P.P., Ningsih, F., Rachmania, M.K., Syafitri, W.A., Sari, D.C.A.F., Yabe, S., Yokota, A., & Sjamsuridzal, W.

Biodiversitas Journal of Biological Diversity, 20(11), 3134โ€“3141

2019

Screening for amylolytic activity and characterization of thermophilic Actinobacteria isolated from a geothermal area in West Java, Indonesia

Syafitri, W.A., Ningsih, F., Setyaningsih, P.P., Rachmania, M.K., Sari, D.C.A.F., Yabe, S., Yokota, A., & Sjamsuridzal, W.

Biodiversitas Journal of Biological Diversity, 20(7), 1929โ€“1938

2019

Gandjariella thermophila gen. nov., sp. nov., a new member of the family Pseudonocardiaceae, isolated from forest soil in a geothermal area

Ningsih, F., Yokota, A., Sakai, Y., Nanatani, K., Yabe, S., Oetari, A., & Sjamsuridzal, W.

International Journal of Systematic and Evolutionary Microbiology, 69(10), 3080โ€“3086

Publikasi Tahun 2016 Research Publications
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2016

Paenibacillus cisolokensis sp. nov., isolated from litter of a geyser

Yokota, A., Ningsih, F., Nurlaili, D.G., Sakai, Y., Yabe, S., Oetari, A., Santoso, I., & Sjamsuridzal, W.

International Journal of Systematic and Evolutionary Microbiology, 66(8), 3088โ€“3094

2016

Polyphasic identification of a thermophilic bacterium from geyser of Cisolok, Indonesia

Mawarid, A.T., Sjamsuridzal, W., Yabe, S., Santoso, I., Ningsih, F., Nurlaili, D.G., Oetari, A., & Yokota, A.

AIP Conference Proceedings, 1729(1), 020067

PUBLIKASI TERKAIT

Publikasi Bioinformatika, Sains Data dan Kecerdasan Artifisial

Kumpulan publikasi ilmiah yang berkaitan dengan bidang bioinformatika, sains data, kecerdasan artifisial, komputasi, genomik, biodiversitas, pertanian, dan lingkungan.

Bioprospeksi, Penemuan Senyawa, dan Interaksi Molekuler Bioprospecting, Compound Discovery & Molecular Interaction
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2024

Decoding the therapeutic potential of empon-empon: A bioinformatics expedition unraveling mechanisms against COVID-19 and atherosclerosis

Hasanah, N., Saputri, F.C., Bustamam, A., Lee, V.S., & Yanuar, A.

International Journal of Applied Pharmaceutics, 16(2), 215โ€“223

2023

Traditional Indonesian medication combats COVID-19

Yanuar, A., Hasanah, N., Saputri, F.C., & Bustamam, A.

KnE Social Sciences, 8(14), 243โ€“266

2022

Evaluation quantitative structure-activity relationship (QSAR) using ensemble learning methods on acetylcholinesterase inhibitors for Alzheimer's disease

Bustamam, A., Mushliha, Yanuar, A., Anki, P., & Ulfa, A.

Communications in Mathematical Biology and Neuroscience, 2022, Article ID 73

Performance of multivariate mutual information and autocorrelation encoding methods for the prediction of protein-protein interactions

Bustamam, A., Sunggawa, M.I., & Siswantining, T.

IAES International Journal of Artificial Intelligence, 11(2), 773โ€“786

2021

Virtual screening of dipeptidyl peptidase-4 inhibitors using quantitative structureโ€“activity relationship-based artificial intelligence and molecular docking of hit compounds

Hermansyah, O., Bustamam, A., & Yanuar, A.

Computational Biology and Chemistry, 95, 107597

Artificial intelligence paradigm for ligand-based virtual screening on the drug discovery of type 2 diabetes mellitus

Bustamam, A., Hamzah, H., Husna, N.A., Syarofina, S., Dwimantara, N., Yanuar, A., & Sarwinda, D.

Journal of Big Data, 8(1), 74

Analysis and prediction of protein interactions between HIV-1 protein and human protein using LCM-MBC algorithm combined with association rule mining

Siswantining, T., Bustamam, A., Swasti, O., & Al-Ash, H.S.

Communications in Mathematical Biology and Neuroscience, 2021, Article ID 64

Analisis Sekuens Genom dan Penyakit Menular Genomic Sequence Analysis & Infectious Diseases
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2022

Triclustering method for finding biomarkers in human immunodeficiency virus-1 gene expression data

Siswantining, T., Bustamam, A., Sarwinda, D., Soemartojo, S.M., Latief, M.A., Octaria, E.A., Siregar, A.T.M., Septa, O., Al-Ash, H.S., & Saputra, N.

Mathematical Biosciences and Engineering, 19(7), 6743โ€“6763

THD-Tricluster method on three dimensional gene expression data of tuberculosis patients

Andika, H.K., Siswantining, T., Bustamam, A., & Anki, P.

2022 6th International Conference on Informatics and Computational Sciences (ICICoS), 48โ€“53

2021

K-means clustering and analyze of SARS-CoV-2 DNA based on multiple encoding vector and k-mer method

Banjarnahor, E., Bustamam, A., Siswantining, T., & Mangunwardoyo, W.

Annals of the Romanian Society for Cell Biology, 25(4), 18647โ€“18658

Looking for the link between the causes of the COVID-19 disease using the multi-model application

Anki, P., Bustamam, A., & Buyung, R.A.

Communications in Mathematical Biology and Neuroscience, 2021, Article ID 75

Analitik Ekspresi Gen, Biclustering, dan Penemuan Biomarker Gene Expression Analytics, Biclustering & Biomarker Discovery
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2026

A comparative study of sequential biclustering and fuzzy c-means, k-nearest neighbors, and mean imputation for missing value estimation in gene expression data

Azzahra, Y., Siswantining, T., Pramana, S., Ganggayah, M.D., & Bustamam, A.

Indonesian Journal of Statistics and Its Applications, 10(1), 37โ€“46

2023

Lung cancer classification based on support vector machine-recursive feature elimination and artificial bee colony

Bustamam, A., Rustam, Z., Kharis, S.A.A., Wibawa, N.A., Sarwinda, D., & Husna, N.A.

Annals of Mathematical Modeling, 3(1), 1โ€“13

2022

ฮด-TRIMAX method with silhouette coefficient on microarray gene expression data for early detection of heart failure

Daeng, W.A.N., Siswantining, T., Bustamam, A., & Anki, P.

2022 5th International Conference on Information and Communications Technology (ICOIACT), 412โ€“416

2021

Biclustering of diabetic nephropathy and diabetic retinopathy microarray data using a similarity-based biclustering algorithm

Siswantining, T., Bustamam, A., Puspa, S.D., Rustam, Z., & Zubedi, F.

International Journal of Bioinformatics Research and Applications, 17(4), 343โ€“362

Analisis hasil bicluster algoritma POLS pada interaksi protein manusia dan HIV-1

Kaloka, T.P., Siswantining, T., & Bustamam, A.

Jurnal Riset dan Aplikasi Matematika (JRAM), 5(1), 60โ€“67

2020

Finding correlated biclusters from microarray data using the modified lift algorithm based on new residue score

Bustamam, A., Formalidin, S., Siswantining, T., & Rustam, Z.

International Journal of Data Mining and Bioinformatics, 24(4), 326โ€“343

Komputasi Kinerja Tinggi, Metode AI, dan Model Bahasa Biomedis High-Performance Computing, AI Methods & Biomedical Language Models
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2025

Reconstruction of the Phi-2 method for question-answering related to diabetes disease using the MedAlpaca dataset

Ridho, M., Bustamam, A., & Adnan, R.

Jambura Journal of Biomathematics, 6(3), 183โ€“187

2024

Fast sampling of score-based models with cyclical diffusion sampling

Makhtidi, K., Bustamam, A., Adnan, R., Robbani, H.A., Mangunwardoyo, W., & Khan, M.A.

IEEE Access, 12, 49578โ€“49589

2023

On performance and calibration of natural gradient Langevin dynamics

Robbani, H.A., Bustamam, A., Adnan, R., & Ahmad, S.

IEEE Access, 11, 53919โ€“53931

2022

Training deep energy-based models through cyclical stochastic gradient Langevin dynamics

Makhtidi, K., Bustamam, A. & Adnan, R.

2022 5th International Seminar on Research of Information Technology and Intelligent Systems (ISRITI), 654โ€“659

Keanekaragaman Hayati, Pertanian, dan Lingkungan Biodiversity, Agriculture & Environment
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2025

Exploitation status and stock assessment of daisy parrotfish (Chlorurus sordidus) in Karimunjawa Marine National Park, Central Java, Indonesia

Wijayanto, D., Bustamam, A., Arkerman, Y., Amri, K., Tirtadanu, Winarso, G., Hermadi, I., Kailaku, S.I., Kurohman, F., Putranto, M.R., & Kurnia, D.J.

Biodiversitas Journal of Biological Diversity, 26(9), 4831โ€“4837

Detection of leaf fall disease in Sembawa rubber plantation through feature extraction model and clustering methods

Bustamam, A., Sarwinda, D., Lestari, R., Farhani, A.I., Setyawan, H.A., Manessa, M.D.M., Febbiyanti, T.R., & Matsui, M.

International Journal of Advanced Computer Science and Applications, 16(8), 304โ€“312

2024

Rice phenology classification model based on Sentinel-1 using machine learning method on Google Earth Engine

Muradi, H., Domiri, D.D., Parsa, I.M., Yoga, I.K., Bustamam, A., Rarasati, A., Harini, S., Manalu, R.J., & Subehi, M.

Canadian Journal of Remote Sensing, 50(1), 2368036

Distribusi spasial kesehatan tanaman karet menggunakan Sentinel-1

Ayu, F., Riesnandar, A.A., Manessa, M.D.M., Supriatna, S., Lestari, R., Bustamam, A., Sarwinda, D., Stevanus, C.T., & Efriana, A.F.

Jurnal Penelitian Karet, 42(1), 9โ€“20

2023

Study of rubber leaf disease using hyperspectral reflectance

Manessa, M.D., Rokhmatuloh, Shidiq, I.P.A., Nagasawa, R., Ayu, F., Efriana, A.F., Budhiman, R.L., Bustamam, A., Matsui, M., Kase, K., Makita, Y., Febbiyanti, T.R., Oktavia, F., & Stevanus, C.T.

Proceedings of SPIE, Vol. 12327 โ€“ SPIE Future Sensing Technologies 2023, 123270F

Buku Books
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2024

Komputasi paralel jilid 2: MPI dan CUDA

Bustamam, A., dkk.

Gramedia Group

2023

Komputasi paralel: OpenMP

Bustamam, A., Al Kafi, R., Kaloka, T.P., Maharani, D., & Setyaningrum, N.

Gue Media Group ยท ISBN 978-623-421-295-2

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